STRINGSTRING
Solyc04g005480.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g005480.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g005480.1.1Uncharacterized protein (170 aa)    
Predicted Functional Partners:
Solyc09g018280.1.1
Non-specific serine/threonine protein kinase (443 aa)
       
      0.510
PP2Ac1
Serine/threonine-protein phosphatase (306 aa)
       
      0.483
PP2Ac2
Serine/threonine-protein phosphatase (306 aa)
       
      0.483
Solyc02g094130.2.1
Uncharacterized protein (262 aa)
     
   
  0.472
Solyc02g068120.2.1
Uncharacterized protein (302 aa)
     
   
  0.472
Solyc08g082610.2.1
Uncharacterized protein (328 aa)
           
  0.459
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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