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STRINGSTRING
Solyc04g005690.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g005690.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g005690.2.1annotation not available (768 aa)    
Predicted Functional Partners:
101254575
Uncharacterized protein; Splicing factor-related (509 aa)
     
  0.997
101255621
Hydroxyproline-rich glycoprotein family protein (345 aa)
     
  0.991
cdc5
CDC5-like protein (987 aa)
     
 
  0.987
Solyc03g006520.2.1
annotation not available (591 aa)
     
 
  0.986
101264481
annotation not available (586 aa)
     
 
  0.986
Solyc07g007210.2.1
annotation not available (925 aa)
     
 
  0.978
Solyc10g081290.1.1
annotation not available (207 aa)
     
 
  0.953
Solyc10g081090.1.1
annotation not available (127 aa)
     
 
  0.953
Solyc10g081070.1.1
annotation not available (684 aa)
     
 
  0.953
Solyc07g041790.1.1
annotation not available (73 aa)
     
 
  0.953
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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