STRINGSTRING
Solyc04g007850.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g007850.2.1" - Protein BCCIP homolog in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g007850.2.1Protein BCCIP homolog (298 aa)    
Predicted Functional Partners:
Solyc03g083440.2.1
Uncharacterized protein (2226 aa)
       
      0.980
Solyc03g063560.2.1
Uncharacterized protein (1621 aa)
       
      0.951
Solyc01g098100.2.1
60S ribosome subunit biogenesis protein NIP7 homolog ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
        0.948
Solyc09g090610.2.1
Ribosomal protein L17 (140 aa)
     
      0.901
Solyc09g072870.2.1
Ribosomal protein L17 (140 aa)
     
      0.901
Solyc06g083780.2.1
Ribosomal protein L17 (140 aa)
     
      0.901
Solyc06g008170.2.1
Ribosomal protein L17 (140 aa)
     
      0.901
Solyc03g119380.1.1
Uncharacterized protein (117 aa)
     
      0.901
Solyc03g058210.1.1
Uncharacterized protein (74 aa)
     
      0.901
rpl14
50S ribosomal protein L14, chloroplastic ; Binds to 23S rRNA (122 aa)
     
      0.901
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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