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Solyc04g008030.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g008030.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g008030.1.1Uncharacterized protein; Cleavage and polyadenylation specificity factor 73 kDa subunit-II (649 aa)    
Predicted Functional Partners:
101254167
Uncharacterized protein; Cleavage and polyadenylation specificity factor 100 (739 aa)
     
 
0.989
101264832
Uncharacterized protein; Embryo defective 2739 (501 aa)
     
 
  0.988
Solyc03g007100.2.1
Uncharacterized protein; Cleavage and polyadenylation specificity factor 160 (1425 aa)
     
 
  0.987
101254355
annotation not available (671 aa)
     
 
  0.975
101263950
annotation not available (689 aa)
     
 
  0.975
101250484
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Beta-Casp domain (InterPro-IPR022712); BEST Arabidopsis thaliana protein match is- cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR-AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species- A /.../- 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source- NCBI BLink) (693 aa)
     
 
0.967
Solyc01g090260.2.1
annotation not available (497 aa)
     
 
  0.955
Solyc01g090250.2.1
annotation not available (404 aa)
     
 
  0.955
101261244
Uncharacterized protein; Homolog of yeast FIP1 [V] (1380 aa)
     
 
  0.935
101254691
CCCH-type zinc finger family protein (832 aa)
     
 
  0.836
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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