STRINGSTRING
Solyc04g008600.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g008600.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g008600.2.1Uncharacterized protein (296 aa)    
Predicted Functional Partners:
Solyc03g007800.2.1
Uncharacterized protein (1294 aa)
     
  0.991
Solyc07g042790.1.1
Uncharacterized protein (1452 aa)
     
  0.971
Solyc06g034070.1.1
Uncharacterized protein (1557 aa)
     
  0.971
Solyc11g040120.1.1
DNA helicase (860 aa)
     
 
  0.950
Solyc01g105530.2.1
Uncharacterized protein (75 aa)
     
 
  0.950
Solyc01g105520.2.1
Uncharacterized protein (600 aa)
     
 
  0.950
Solyc11g065900.1.1
DNA replication complex GINS protein SLD5 ; The GINS complex plays an essential role in the initiation of DNA replication (223 aa)
     
 
  0.931
Solyc09g008630.2.1
Uncharacterized protein (230 aa)
     
 
  0.930
Solyc01g079500.2.1
DNA helicase (718 aa)
     
 
  0.921
Solyc04g016240.2.1
Uncharacterized protein (862 aa)
     
      0.903
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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