STRINGSTRING
Solyc04g008610.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g008610.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g008610.2.1Uncharacterized protein (1650 aa)    
Predicted Functional Partners:
Solyc10g045400.1.1
Uncharacterized protein (404 aa)
     
  0.725
Solyc06g010200.2.1
Uncharacterized protein (1613 aa)
     
  0.686
Solyc11g067020.1.1
Histone deacetylase (430 aa)
     
  0.684
Solyc09g091440.2.1
Histone deacetylase (498 aa)
     
  0.684
Solyc06g071680.2.1
Histone deacetylase (471 aa)
     
  0.684
Solyc03g112410.1.1
Histone deacetylase (449 aa)
     
  0.684
Solyc10g005880.2.1
Uridine kinase (422 aa)
       
  0.655
Solyc09g011300.2.1
Uncharacterized protein (286 aa)
       
  0.655
Solyc07g065890.2.1
Uridine kinase (446 aa)
       
  0.655
Solyc06g065580.2.1
Uridine kinase (483 aa)
       
  0.655
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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