STRINGSTRING
Solyc04g008680.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g008680.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g008680.2.1Uncharacterized protein (1363 aa)    
Predicted Functional Partners:
Solyc09g008470.2.1
Uncharacterized protein (345 aa)
       
    0.803
Solyc03g006520.2.1
Uncharacterized protein (591 aa)
     
 
    0.664
Solyc02g078610.2.1
Uncharacterized protein (586 aa)
     
 
    0.664
Solyc11g005110.1.1
Uncharacterized protein (523 aa)
     
 
    0.661
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
     
 
    0.620
Solyc01g100660.2.1
Uncharacterized protein (206 aa)
       
 
  0.614
Solyc08g077310.2.1
Uncharacterized protein (1010 aa)
     
    0.614
Solyc08g005190.2.1
Uncharacterized protein (920 aa)
     
 
    0.610
Solyc04g079920.2.1
Uncharacterized protein (597 aa)
     
 
    0.610
Solyc03g122110.1.1
Uncharacterized protein (520 aa)
     
 
    0.610
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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