STRINGSTRING
Solyc04g008820.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g008820.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g008820.2.1Uncharacterized protein (215 aa)    
Predicted Functional Partners:
Solyc10g006770.2.1
Uncharacterized protein (838 aa)
     
  0.893
Solyc01g101030.2.1
Uncharacterized protein (1120 aa)
     
  0.893
Solyc01g101020.2.1
Uncharacterized protein (1067 aa)
     
  0.893
Solyc11g068830.1.1
Uncharacterized protein (477 aa)
       
 
  0.871
Solyc02g087710.2.1
Uncharacterized protein (639 aa)
     
  0.842
Solyc02g087700.2.1
Uncharacterized protein (72 aa)
       
  0.812
Solyc02g087680.1.1
Uncharacterized protein (158 aa)
       
  0.812
Solyc07g005880.2.1
Uncharacterized protein (1012 aa)
     
      0.792
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
     
  0.701
Solyc07g042790.1.1
Uncharacterized protein (1452 aa)
     
 
  0.691
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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