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STRINGSTRING
Solyc04g009280.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g009280.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g009280.1.1annotation not available (84 aa)    
Predicted Functional Partners:
101257580
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (603 aa)
     
 
  0.908
Solyc04g074090.2.1
Uncharacterized protein; Binding (892 aa)
     
 
  0.880
Solyc11g045190.1.1
annotation not available (492 aa)
     
      0.875
Solyc11g045180.1.1
annotation not available (181 aa)
     
      0.875
101263184
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly (329 aa)
     
      0.873
101254024
Antitermination NusB domain-containing protein (291 aa)
     
        0.870
101250822
Nucleic acid-binding, OB-fold-like protein (883 aa)
   
 
  0.865
Solyc10g083600.1.1
Ribosomal RNA processing Brix domain protein (337 aa)
     
 
  0.850
RPE1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
     
   
  0.845
LOC543657
Thioredoxin-like protein CITRX, chloroplastic; Probable thiol-disulfide oxidoreductase that may play a role in proper chloroplast development (By similarity). Negatively regulates Cf-9/Avr9-mediated cell death and defense responses; Belongs to the thioredoxin family. Plant CITRX-type subfamily (175 aa)
     
        0.835
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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