STRINGSTRING
Solyc04g009300.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g009300.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g009300.2.1Uncharacterized protein (665 aa)    
Predicted Functional Partners:
Solyc11g066630.1.1
Uncharacterized protein (145 aa)
     
      0.954
Solyc06g074720.2.1
Uncharacterized protein (219 aa)
     
      0.954
Solyc09g090460.2.1
Uncharacterized protein (440 aa)
     
 
  0.949
Solyc07g053730.2.1
Nucleolar GTP-binding protein 1 ; Involved in the biogenesis of the 60S ribosomal subunit (689 aa)
     
 
  0.949
Solyc01g081010.2.1
Nucleolar GTP-binding protein 1 ; Involved in the biogenesis of the 60S ribosomal subunit (696 aa)
     
 
  0.949
Solyc07g047670.2.1
Pescadillo homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (603 aa)
     
 
  0.946
Solyc04g074090.2.1
Uncharacterized protein (892 aa)
     
 
  0.926
Solyc01g065580.2.1
Uncharacterized protein (620 aa)
     
      0.925
Solyc01g006170.2.1
Uncharacterized protein (288 aa)
     
 
  0.891
Solyc01g006090.2.1
Uncharacterized protein (282 aa)
     
 
  0.891
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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