STRINGSTRING
Solyc04g009430.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g009430.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g009430.2.1Uncharacterized protein (385 aa)    
Predicted Functional Partners:
Solyc00g030210.1.1
Annotation not available (1147 aa)
     
 
  0.886
Solyc07g064950.2.1
Uncharacterized protein (527 aa)
     
      0.884
LOC778319
Similar to 60S ribosomal protein L35 (123 aa)
       
      0.804
Solyc06g072470.2.1
Uncharacterized protein (164 aa)
       
      0.804
Solyc05g054810.2.1
Uncharacterized protein (123 aa)
       
      0.804
Solyc04g010240.2.1
Uncharacterized protein (123 aa)
       
      0.804
Solyc03g097950.2.1
Uncharacterized protein (168 aa)
       
      0.804
Solyc01g010960.1.1
Uncharacterized protein (102 aa)
       
      0.804
Solyc05g014260.2.1
Uncharacterized protein (581 aa)
     
      0.800
Solyc00g055950.1.1
Annotation not available (229 aa)
     
      0.800
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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