STRINGSTRING
Solyc04g009580.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g009580.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g009580.2.1Uncharacterized protein (309 aa)    
Predicted Functional Partners:
Solyc09g083330.2.1
Phosphatidate cytidylyltransferase (424 aa)
   
 
  0.962
Solyc03g005410.2.1
Phosphatidate cytidylyltransferase (426 aa)
   
 
  0.962
Solyc01g090940.2.1
Phosphatidate cytidylyltransferase (416 aa)
   
 
  0.962
Solyc10g005290.2.1
Uncharacterized protein (357 aa)
   
   
0.925
Solyc07g055980.2.1
Uncharacterized protein (338 aa)
         
  0.907
Solyc08g005990.2.1
Uncharacterized protein (223 aa)
         
  0.902
Solyc12g011020.1.1
Uncharacterized protein (312 aa)
         
    0.900
Solyc00g050030.1.1
Annotation not available (702 aa)
     
 
  0.867
Solyc11g013030.1.1
DIS3-like exonuclease 2 ; 3’-5’-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3’ end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3’ (1092 aa)
       
 
  0.807
Solyc09g010870.2.1
Uncharacterized protein (793 aa)
       
 
  0.807
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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