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Solyc04g010230.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g010230.2.1" - Pectate lyase in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g010230.2.1Pectate lyase (336 aa)    
Predicted Functional Partners:
Solyc00g023470.1.1
Annotation not available (348 aa)
 
   
  0.944
Solyc02g062150.1.1
Pectinesterase (351 aa)
 
   
  0.944
Solyc10g049370.1.1
Pectinesterase (346 aa)
 
   
  0.943
Solyc00g027770.2.1
Annotation not available (317 aa)
 
   
  0.943
Solyc05g052120.2.1
Pectinesterase (342 aa)
 
   
  0.943
Solyc00g170510.1.1
Annotation not available (292 aa)
 
   
  0.943
Solyc12g008530.1.1
Pectinesterase (378 aa)
 
   
  0.943
Solyc05g052110.2.1
Pectinesterase (368 aa)
 
   
  0.943
Solyc01g091050.2.1
Pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (524 aa)
 
   
  0.943
Solyc01g066420.2.1
Pectinesterase (552 aa)
 
   
  0.943
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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