STRINGSTRING
Solyc04g012170.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g012170.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g012170.2.1Uncharacterized protein (1516 aa)    
Predicted Functional Partners:
Solyc04g015350.2.1
Uncharacterized protein (815 aa)
     
  0.999
atg6
Hop-interacting protein THI040 (523 aa)
     
  0.992
Solyc12g056940.1.1
Uncharacterized protein (2210 aa)
       
      0.961
Solyc11g043120.1.1
Uncharacterized protein (517 aa)
     
  0.949
Solyc01g111870.1.1
Uncharacterized protein (2728 aa)
     
  0.941
Solyc09g037010.1.1
Uncharacterized protein (205 aa)
     
  0.940
Solyc03g051700.1.1
Uncharacterized protein (199 aa)
     
  0.940
Solyc01g109080.2.1
Uncharacterized protein (3719 aa)
     
  0.940
Solyc01g106860.2.1
Uncharacterized protein (84 aa)
     
  0.940
Solyc01g106840.1.1
Uncharacterized protein (90 aa)
     
  0.940
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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