STRINGSTRING
Solyc04g016390.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g016390.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g016390.1.1Uncharacterized protein (60 aa)    
Predicted Functional Partners:
Solyc00g026870.1.1
Annotation not available (465 aa)
   
  0.988
rps3
30S ribosomal protein S3, chloroplastic (352 aa)
   
  0.985
Solyc11g021130.1.1
Ribosomal protein S7 (285 aa)
   
  0.981
Solyc12g013990.1.1
Uncharacterized protein (398 aa)
   
  0.970
Solyc01g087730.2.1
Ribosomal protein (338 aa)
   
  0.970
Solyc10g038060.1.1
Uncharacterized protein (145 aa)
   
  0.969
Solyc09g090410.2.1
Uncharacterized protein (149 aa)
   
  0.969
Solyc08g065760.2.1
Uncharacterized protein (211 aa)
   
  0.969
Solyc09g091520.1.1
60S acidic ribosomal protein P0 ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (320 aa)
   
  0.968
Solyc06g076870.2.1
60S acidic ribosomal protein P0 ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (318 aa)
   
  0.968
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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