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SGS3 protein (Solanum lycopersicum) - STRING interaction network
"SGS3" - Protein SUPPRESSOR OF GENE SILENCING 3 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGS3Protein SUPPRESSOR OF GENE SILENCING 3; Required for post-transcriptional gene silencing and natural virus resistance (633 aa)    
Predicted Functional Partners:
DCL4
Uncharacterized protein; Dicer-like 4; Belongs to the helicase family. Dicer subfamily (1536 aa)
           
  0.951
AGO7
AGO7; Argonaute family protein; Belongs to the argonaute family (1000 aa)
     
   
  0.950
101250389
RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (1119 aa)
     
 
  0.932
Solyc08g075820.2.1
RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (1179 aa)
     
 
  0.920
101055593
RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (1197 aa)
     
 
  0.920
AGO1-1
Argonaute1-1; Argonaute 1 ; Belongs to the argonaute family (1054 aa)
     
   
  0.907
Solyc01g056620.2.1
double-stranded-RNA-binding protein 4 (288 aa)
           
  0.905
DCL
Protein DCL, chloroplastic; Has a function in the early stage of chloroplast development and palisade cell morphogenesis. Required for correct plastid ribosome assembly. Required for processing and maturation of 4.5S rRNA (224 aa)
           
  0.866
DCL1
Uncharacterized protein; Dicer-like 1; Belongs to the helicase family. Dicer subfamily (1888 aa)
           
  0.812
RPD1
Uncharacterized protein; DNA-directed RNA polymerase (1206 aa)
           
  0.797
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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