STRINGSTRING
SGS3 protein (Solanum lycopersicum) - STRING interaction network
"SGS3" - Protein SUPPRESSOR OF GENE SILENCING 3 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGS3Protein SUPPRESSOR OF GENE SILENCING 3 ; Required for post-transcriptional gene silencing and natural virus resistance (633 aa)    
Predicted Functional Partners:
AGO7
Argonaute 7 (1000 aa)
           
  0.845
Solyc08g075820.2.1
Uncharacterized protein (1179 aa)
     
 
  0.816
Solyc04g014870.2.1
Uncharacterized protein (1197 aa)
     
 
  0.816
DCL1
Endoribonuclease Dicer homolog 1 (1888 aa)
           
  0.775
DCL3
Endoribonuclease Dicer homolog 3a (1430 aa)
           
  0.732
Solyc03g114140.2.1
Uncharacterized protein (1119 aa)
     
 
  0.667
RdRP
RNA-directed RNA polymerase (1114 aa)
     
 
  0.648
ARF4
Auxin response factor 4 ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (811 aa)
           
  0.563
Solyc07g005030.2.1
Uncharacterized protein (1536 aa)
           
  0.543
AGO1-1
Argonaute 1 (1054 aa)
           
  0.533
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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