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STRINGSTRING
Solyc04g028580.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g028580.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g028580.1.1annotation not available (346 aa)    
Predicted Functional Partners:
Solyc00g042130.1.1
annotation not available (704 aa)
   
 
  0.984
Solyc12g062630.1.1
annotation not available (134 aa)
   
 
  0.919
Solyc07g021380.1.1
annotation not available (121 aa)
   
 
  0.891
101268740
Histone H2A protein 9 (135 aa)
       
 
  0.742
100134887
Embryonic flower 2 (638 aa)
       
 
  0.709
101263337
Protein arginine methyltransferase 10; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family (371 aa)
     
   
  0.697
101257833
ATPase, F1 complex, gamma subunit protein (349 aa)
   
 
  0.679
101260525
Uncharacterized protein; Gamma subunit of Mt ATP synthase (324 aa)
   
 
  0.679
101253342
ATPase, F1 complex, gamma subunit protein (377 aa)
   
 
  0.679
Solyc00g042140.1.1
annotation not available (399 aa)
   
 
  0.679
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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