STRINGSTRING
Solyc04g040120.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g040120.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g040120.1.1Uncharacterized protein (375 aa)    
Predicted Functional Partners:
Solyc03g116730.2.1
Uncharacterized protein (387 aa)
   
   
  0.505
Solyc12g056940.1.1
Uncharacterized protein (2210 aa)
     
   
  0.438
Solyc12g009260.1.1
3-oxoacyl-[acyl-carrier-protein] synthase (443 aa)
     
   
  0.402
Solyc08g082620.2.1
Uncharacterized protein (485 aa)
     
   
  0.402
Solyc08g016170.2.1
Uncharacterized protein (468 aa)
     
   
  0.402
Solyc07g049570.2.1
3-oxoacyl-[acyl-carrier-protein] synthase (465 aa)
     
   
  0.402
Solyc03g122120.2.1
Uncharacterized protein (558 aa)
     
   
  0.402
Solyc03g122100.1.1
Uncharacterized protein (409 aa)
     
   
  0.402
Solyc02g070790.2.1
Uncharacterized protein (469 aa)
     
   
  0.402
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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