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Solyc04g047690.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g047690.2.1" - Vesicle transport protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
Solyc04g047690.2.1Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex (72 aa)    
Predicted Functional Partners:
101248296
Unknown protein; Has 54 Blast hits to 54 proteins in 19 species- Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink) (202 aa)
       
      0.766
101255703
annotation not available (409 aa)
       
      0.706
Solyc10g076350.1.1
annotation not available (136 aa)
     
   
  0.605
101253800
Tautomerase/MIF superfamily protein (115 aa)
     
   
  0.605
Solyc11g068750.1.1
annotation not available (452 aa)
       
      0.574
101250531
Uncharacterized protein; Syntaxin of plants 32; Belongs to the syntaxin family (341 aa)
     
 
  0.571
Solyc07g054140.2.1
Uncharacterized protein; Syntaxin of plants 31; Belongs to the syntaxin family (318 aa)
     
 
  0.571
101243848
F-box protein 7 (327 aa)
           
  0.571
101259553
annotation not available (199 aa)
     
 
  0.551
100736470
Autophagy-related protein; Autophagy 8h ; Belongs to the ATG8 family (119 aa)
     
 
  0.519
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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