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STRINGSTRING
Solyc04g047740.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g047740.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g047740.1.1annotation not available (149 aa)    
Predicted Functional Partners:
101253805
annotation not available (482 aa)
   
   
  0.939
101249137
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family (406 aa)
     
   
  0.895
101257241
Uncharacterized protein; DnaJ/Hsp40 cysteine-rich domain superfamily protein (132 aa)
     
        0.863
101259142
annotation not available (312 aa)
     
        0.859
101250451
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
        0.859
POLR1B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1096 aa)
     
   
  0.855
101248579
Uncharacterized protein; DNA-directed RNA polymerases (231 aa)
     
        0.849
101249276
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane, chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein matc /.../photosystem I P subunit (TAIR-AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species- Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink) (147 aa)
     
        0.847
101257709
Ribosomal protein S8e family protein (260 aa)
     
        0.845
101259513
Chloroplast thylakoid lumen protein (210 aa)
     
        0.831
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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