STRINGSTRING
Solyc04g047740.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g047740.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g047740.1.1Uncharacterized protein (149 aa)    
Predicted Functional Partners:
Solyc04g049490.2.1
Uncharacterized protein (824 aa)
       
      0.871
Solyc02g094090.2.1
Uncharacterized protein (696 aa)
       
      0.871
Solyc08g081150.2.1
Uncharacterized protein (536 aa)
   
 
  0.715
Solyc10g018300.1.1
Uncharacterized protein (741 aa)
   
  0.709
Solyc05g050970.2.1
Uncharacterized protein (774 aa)
   
  0.709
Solyc01g018020.1.1
Uncharacterized protein (787 aa)
   
  0.709
Solyc05g007260.2.1
Ribulose-phosphate 3-epimerase (216 aa)
   
  0.700
Solyc03g115820.2.1
Uncharacterized protein (282 aa)
   
  0.700
Solyc00g050030.1.1
Annotation not available (702 aa)
   
   
  0.658
LOC543811
Transaldolase ToTAL2 (397 aa)
   
   
  0.655
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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