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STRINGSTRING
Solyc04g049840.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g049840.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g049840.2.1annotation not available (861 aa)    
Predicted Functional Partners:
101245924
Uncharacterized protein; Transcription regulator NOT2/NOT3/NOT5 family protein (848 aa)
     
 
  0.953
CNOT1
Uncharacterized protein; Transcription regulators (2411 aa)
     
 
  0.938
101250941
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII) (1642 aa)
     
        0.848
101247472
annotation not available (1846 aa)
     
   
  0.842
101257890
Ubiquitin-protein ligase 4 (1553 aa)
     
   
  0.842
Solyc01g111530.2.1
annotation not available (1860 aa)
     
   
  0.842
Solyc10g078950.1.1
annotation not available (561 aa)
     
 
  0.768
101260665
annotation not available (389 aa)
     
 
  0.768
Solyc03g059010.2.1
annotation not available (594 aa)
     
 
  0.768
101258724
annotation not available (628 aa)
     
 
  0.747
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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