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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc04g049870.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g049870.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g049870.1.1annotation not available (204 aa)    
Predicted Functional Partners:
101265523
Cytochrome c biogenesis protein family (158 aa)
 
 
  0.959
101244026
annotation not available (281 aa)
 
 
  0.892
101251858
annotation not available (281 aa)
 
 
  0.892
Solyc11g030570.1.1
Uncharacterized protein; NADH dehydrogenase subunit 4 (63 aa)
     
   
  0.759
Solyc11g039360.1.1
annotation not available (344 aa)
     
 
  0.639
Solyc10g076630.1.1
annotation not available (134 aa)
     
 
  0.639
Solyc00g052430.2.1
annotation not available (379 aa)
     
 
  0.639
101260676
Uncharacterized protein; Pentatricopeptide repeat (PPR) superfamily protein (687 aa)
           
  0.638
Solyc07g032420.1.1
annotation not available (186 aa)
     
   
  0.577
101268704
Cytochrome c biogenesis protein family (382 aa)
         
  0.575
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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