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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc04g050370.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g050370.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g050370.1.1annotation not available (68 aa)    
Predicted Functional Partners:
Solyc11g021130.1.1
annotation not available (285 aa)
   
 
  0.982
Solyc04g049260.1.1
annotation not available (166 aa)
   
 
  0.982
DDTFR19
60S ribosomal protein L29; Ripening regulated protein DDTFR19 ; Belongs to the eukaryotic ribosomal protein eL29 family (60 aa)
     
 
  0.980
101265312
annotation not available (120 aa)
   
 
  0.965
101251086
annotation not available (120 aa)
   
 
  0.965
RPL3
Ribosomal protein L3 ; Belongs to the universal ribosomal protein uL3 family (389 aa)
   
 
  0.964
Solyc01g103510.2.1
R-protein L3 B; Belongs to the universal ribosomal protein uL3 family (443 aa)
   
 
  0.964
101254318
annotation not available (133 aa)
     
 
  0.960
101253152
annotation not available (133 aa)
     
 
  0.960
104648409
annotation not available (112 aa)
   
 
  0.960
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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