STRINGSTRING
Solyc04g050540.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g050540.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g050540.2.1Uncharacterized protein (891 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (266 aa)
       
 
  0.691
CIP5
CONSTANS interacting protein 5 (683 aa)
     
   
  0.575
Solyc02g070390.2.1
Hop-interacting protein THI030 (528 aa)
     
   
  0.500
Solyc09g011850.2.1
Uncharacterized protein (478 aa)
     
   
  0.497
Solyc04g057870.2.1
Uncharacterized protein (335 aa)
     
   
  0.439
Solyc03g113630.2.1
Uncharacterized protein (860 aa)
     
   
0.436
Solyc05g012100.2.1
Uncharacterized protein (645 aa)
     
   
  0.435
Solyc02g081920.2.1
Uncharacterized protein (509 aa)
     
   
  0.419
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (17%) [HD]