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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc04g054660.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g054660.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g054660.1.1annotation not available (184 aa)    
Predicted Functional Partners:
101266098
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress (317 aa)
           
  0.732
101246440
annotation not available (857 aa)
     
 
  0.675
Wfi1
Uncharacterized protein; Whitefly-induced gp91-phox (938 aa)
     
 
  0.675
101254135
Uncharacterized protein; NAD(P)-linked oxidoreductase superfamily protein (321 aa)
       
 
  0.654
101247387
annotation not available (642 aa)
       
 
  0.633
Solyc11g011870.1.1
annotation not available (455 aa)
       
 
  0.633
Solyc05g005060.2.1
annotation not available (329 aa)
       
 
  0.633
Solyc05g005050.2.1
annotation not available (299 aa)
       
 
  0.633
Solyc11g018800.1.1
annotation not available (319 aa)
     
   
  0.621
Solyc09g082790.2.1
DNA repair (Rad51) family protein; Belongs to the RecA family (334 aa)
           
  0.620
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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