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STRINGSTRING
Solyc04g056410.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g056410.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g056410.2.1annotation not available (587 aa)    
Predicted Functional Partners:
RAD51
DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Underwinds duplex DNA (By similarity) (342 aa)
     
 
  0.967
Solyc09g082790.2.1
DNA repair (Rad51) family protein; Belongs to the RecA family (334 aa)
       
 
  0.836
101260670
Uncharacterized protein; KU70 homolog (624 aa)
     
 
  0.805
101245268
Uncharacterized protein; Homolog of X-ray repair cross complementing 3 (XRCC3) (285 aa)
     
 
  0.790
Solyc11g073220.1.1
Uncharacterized protein; Homolog of RAD51 D (311 aa)
     
 
  0.759
101261637
recA DNA recombination family protein; Belongs to the RecA family (419 aa)
     
 
  0.757
Solyc07g018000.2.1
annotation not available (574 aa)
     
 
  0.751
Solyc07g017990.2.1
annotation not available (563 aa)
     
 
  0.751
101261110
Nucleotide repair protein, putative (390 aa)
     
 
  0.748
101250733
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
     
 
  0.746
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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