• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc04g056450.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g056450.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g056450.2.1annotation not available (582 aa)    
Predicted Functional Partners:
101259712
Uncharacterized protein; Nucleotide-diphospho-sugar transferases superfamily protein (519 aa)
           
  0.576
101252086
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknow /.../tion DUF1365 (InterPro-IPR010775); Has 1789 Blast hits to 1789 proteins in 449 species- Archae - 0; Bacteria - 824; Metazoa - 0; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 920 (source- NCBI BLink) (319 aa)
 
     
  0.491
Solyc04g056440.1.1
annotation not available (210 aa)
 
          0.422
101260326
Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (159 aa)
       
      0.407
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (9%) [HD]