STRINGSTRING
Solyc04g056540.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g056540.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g056540.2.1Uncharacterized protein (603 aa)    
Predicted Functional Partners:
Solyc11g073160.1.1
Uncharacterized protein (482 aa)
 
  0.999
Solyc11g010300.1.1
Uncharacterized protein (551 aa)
 
  0.999
ribA
GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone-4-phosphate synthase (552 aa)
 
  0.999
Solyc12g096590.1.1
6,7-dimethyl-8-ribityllumazine synthase ; Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin (232 aa)
 
  0.991
Solyc08g015660.2.1
6,7-dimethyl-8-ribityllumazine synthase ; Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin (232 aa)
 
  0.991
Solyc01g094500.2.1
Uncharacterized protein (439 aa)
 
   
0.978
Solyc07g054190.2.1
Uncharacterized protein (306 aa)
 
  0.940
Solyc01g109830.2.1
Bifunctional dihydrofolate reductase-thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (527 aa)
       
  0.807
Solyc08g066180.2.1
Uncharacterized protein (587 aa)
       
    0.756
Solyc10g005880.2.1
Uridine kinase (422 aa)
   
 
    0.755
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (25%) [HD]