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STRINGSTRING
104646915 protein (Solanum lycopersicum) - STRING interaction network
"104646915" - Unknown protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
104646915Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source- NCBI BLink) (206 aa)    
Predicted Functional Partners:
Solyc11g064800.1.1
Lateral root primordium (LRP) protein-related (379 aa)
           
  0.699
Solyc10g047350.1.1
annotation not available (384 aa)
           
  0.615
101245202
Uncharacterized protein; Basic helix-loop-helix (bHLH) DNA-binding superfamily protein (233 aa)
     
        0.607
SlbHLH068
annotation not available (193 aa)
           
  0.603
101257620
annotation not available (250 aa)
           
  0.603
101245633
DNA-binding protein (241 aa)
           
  0.594
101265719
annotation not available (398 aa)
     
   
  0.579
101257584
annotation not available (508 aa)
           
  0.576
101253249
annotation not available (297 aa)
           
  0.572
101265934
annotation not available (596 aa)
     
   
  0.519
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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