STRINGSTRING
Solyc04g057960.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g057960.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g057960.2.1Uncharacterized protein (1128 aa)    
Predicted Functional Partners:
Solyc06g008730.2.1
Uncharacterized protein (929 aa)
   
0.995
Solyc06g060720.2.1
Uncharacterized protein (248 aa)
     
 
  0.898
Solyc05g054950.2.1
Peroxin-12 ; Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes (393 aa)
     
 
  0.898
Solyc04g080930.2.1
Uncharacterized protein (397 aa)
     
 
  0.896
Solyc06g084440.2.1
Uncharacterized protein (411 aa)
     
  0.873
Solyc02g080380.2.1
Derlin ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (245 aa)
       
  0.865
Solyc07g048120.2.1
Uncharacterized protein (569 aa)
     
  0.823
Solyc01g110410.2.1
Uncharacterized protein (317 aa)
     
  0.823
Solyc11g007590.1.1
Uncharacterized protein (338 aa)
     
    0.710
Solyc07g064590.2.1
Uncharacterized protein (188 aa)
     
    0.710
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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