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STRINGSTRING
GRAS6 protein (Solanum lycopersicum) - STRING interaction network
"GRAS6" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GRAS6Uncharacterized protein; GRAS6 ; Belongs to the GRAS family (563 aa)    
Predicted Functional Partners:
101254943
Histone deacetylase 1; Belongs to the histone deacetylase family. HD Type 1 subfamily (498 aa)
       
      0.842
BBR/BPC1
Uncharacterized protein; GAGA-binding transcriptional activator (291 aa)
           
  0.797
101259362
Uncharacterized protein; E2F transcription factor 3 (479 aa)
           
  0.730
Solyc12g049320.1.1
annotation not available (267 aa)
           
  0.703
Solyc09g065300.2.1
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast, membrane; Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991 /.../ts - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (209 aa)
           
  0.656
LOC544256
Uncharacterized protein; TAGL12 transcription factor (201 aa)
       
 
  0.588
101260286
annotation not available (459 aa)
       
 
  0.577
101250172
annotation not available (487 aa)
       
 
  0.577
Solyc12g038390.1.1
annotation not available (82 aa)
           
  0.567
Solyc06g069310.2.1
annotation not available (131 aa)
           
  0.567
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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