• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc04g072390.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g072390.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g072390.2.1Uncharacterized protein; S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (353 aa)    
Predicted Functional Partners:
Solyc04g074150.1.1
annotation not available (115 aa)
     
 
  0.983
101260324
Uncharacterized protein; RNA-binding (RRM/RBD/RNP motifs) family protein (342 aa)
 
       
  0.980
Solyc05g055610.2.1
Met-10+ like family protein / kelch repeat-containing protein (994 aa)
   
 
  0.915
Solyc12g100070.1.1
Uncharacterized protein; S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (196 aa)
     
 
  0.908
Solyc05g006200.2.1
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family (491 aa)
   
 
  0.898
101247928
Uncharacterized protein; S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (290 aa)
     
   
  0.878
Solyc11g012760.1.1
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- tRNA (guanine-N1-)-methyltr /.../ase (InterPro-IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro-IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro-IPR007356); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukar [...] (328 aa)
     
   
  0.871
Solyc01g096760.2.1
Pre-rRNA-processing protein TSR2, conserved region (170 aa)
     
      0.866
101246388
Uncharacterized protein; Methyltransferases;nucleic acid binding (481 aa)
     
   
  0.864
101246236
Elongator complex protein 3; Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (565 aa)
   
   
  0.864
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (8%) [HD]