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STRINGSTRING
Solyc04g072670.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g072670.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g072670.2.1annotation not available (760 aa)    
Predicted Functional Partners:
101260232
Uncharacterized protein; SIN3 associated polypeptide P18 (156 aa)
     
  0.991
101245685
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- mRNA splicing factor, Cwf21 (InterPro-IPR013170); Has 30201 Blast hits to 17322 proteins in 780 sp /.../ Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (639 aa)
     
 
  0.976
101244573
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion; EXPRESSED IN- 26 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Mitochondrial inner membrane protein Mit /.../ (InterPro-IPR019133); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink); Belongs to the MICOS complex subunit Mic60 family (639 aa)
           
  0.851
101260498
Uncharacterized protein; RNA-binding (RRM/RBD/RNP motifs) family protein (219 aa)
     
 
  0.850
101268437
annotation not available (196 aa)
     
 
  0.850
Solyc03g094090.2.1
annotation not available (105 aa)
     
 
  0.850
Solyc03g094080.2.1
annotation not available (159 aa)
     
 
  0.850
Solyc03g094060.2.1
annotation not available (295 aa)
     
 
  0.850
Solyc03g094040.2.1
annotation not available (153 aa)
     
 
  0.850
101263053
Splicing factor PWI domain-containing protein (921 aa)
     
   
  0.742
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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