STRINGSTRING
Solyc04g072770.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g072770.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g072770.2.1Uncharacterized protein (560 aa)    
Predicted Functional Partners:
Solyc01g068290.2.1
Uncharacterized protein (707 aa)
 
  0.954
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
   
   
  0.769
Solyc03g113860.1.1
Uncharacterized protein (288 aa)
   
   
  0.747
Solyc12g062630.1.1
Uncharacterized protein (134 aa)
   
   
  0.651
Solyc00g042130.1.1
Annotation not available (704 aa)
         
  0.617
Solyc09g074100.2.1
Uncharacterized protein (484 aa)
 
 
  0.595
Solyc00g030210.1.1
Annotation not available (1147 aa)
     
 
  0.547
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
     
   
  0.546
Solyc09g008130.2.1
Phosphoglycerate kinase (683 aa)
   
   
  0.532
Solyc05g056260.2.1
Uncharacterized protein (342 aa)
     
   
  0.532
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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