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SlArf/Xyl3 protein (Solanum lycopersicum) - STRING interaction network
"SlArf/Xyl3" - SlArf protein ( Xyl3protein ) in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SlArf/Xyl3SlArf protein ( Xyl3protein ); SlArf/Xyl3 protein (777 aa)    
Predicted Functional Partners:
ARF11
Auxin response factor 2B; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components. May act as a transcriptional repressor of auxin-responsive genes (828 aa)
           
  0.734
Solyc05g014260.2.1
Two-component response regulator; Transcriptional activator that binds specific DNA sequence (581 aa)
           
  0.548
101244868
Auxin-like 1 protein (1511 aa)
           
  0.520
101251157
Uncharacterized protein; STT7 homolog STN7 (555 aa)
           
  0.482
Solyc01g005830.2.1
annotation not available (267 aa)
     
   
  0.444
ARF17
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (342 aa)
           
  0.437
Solyc08g082170.2.1
annotation not available (467 aa)
     
   
  0.436
101261726
annotation not available (331 aa)
           
  0.431
Solyc06g054340.1.1
annotation not available (190 aa)
           
  0.431
Solyc06g054330.2.1
annotation not available (148 aa)
           
  0.431
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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