STRINGSTRING
LOC544219 protein (Solanum lycopersicum) - STRING interaction network
"LOC544219" - Cryptochrome 1 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC544219Cryptochrome 1 (679 aa)    
Predicted Functional Partners:
COP1
COP1 homolog (677 aa)
       
  0.950
Solyc10g011690.2.1
Uncharacterized protein (1019 aa)
       
  0.880
Solyc08g081990.2.1
Uncharacterized protein (1052 aa)
       
  0.880
phyA
Phytochrome ; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1123 aa)
     
 
  0.860
Solyc12g095900.1.1
Uncharacterized protein (722 aa)
         
  0.857
Solyc11g070100.1.1
Uncharacterized protein (603 aa)
         
  0.857
Solyc08g065870.2.1
Uncharacterized protein (644 aa)
         
  0.857
Solyc06g062480.2.1
Uncharacterized protein (602 aa)
         
  0.857
PHYB1
Phytochrome B1 ; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose- bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reduc [...] (1131 aa)
     
 
  0.854
Solyc11g011980.1.1
Uncharacterized protein (672 aa)
       
  0.847
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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