• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
101248191 protein (Solanum lycopersicum) - STRING interaction network
"101248191" - Transducin family protein / WD-40 repeat family protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101248191Transducin family protein / WD-40 repeat family protein (761 aa)    
Predicted Functional Partners:
DDB1
DNA damage-binding protein 1; Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5 (1095 aa)
     
 
  0.952
101263135
Uncharacterized protein; NDR1/HIN1-like 8 (678 aa)
     
   
  0.763
Solyc04g007850.2.1
annotation not available (298 aa)
           
  0.763
101253825
HIT-type Zinc finger family protein (373 aa)
           
  0.763
101253742
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (442 aa)
           
  0.760
101265597
Transducin family protein / WD-40 repeat family protein (354 aa)
           
  0.753
FTB
Farnesyl-protein transferase beta subunit (457 aa)
           
  0.719
101260591
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1677 aa)
           
  0.700
Solyc08g023590.2.1
annotation not available (386 aa)
     
   
  0.699
Solyc08g023580.2.1
annotation not available (203 aa)
     
   
  0.699
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (9%) [HD]