• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc04g076210.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g076210.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g076210.2.1Uncharacterized protein; Ubiquitin-specific protease 16 (1099 aa)    
Predicted Functional Partners:
101254439
Serine hydroxymethyltransferase; Interconversion of serine and glycine; Belongs to the SHMT family (518 aa)
       
 
  0.974
101266291
Uncharacterized protein; Heavy metal transport/detoxification superfamily protein (159 aa)
       
 
  0.939
101264818
Serine hydroxymethyltransferase; Interconversion of serine and glycine; Belongs to the SHMT family (517 aa)
       
 
  0.881
101253672
Uncharacterized protein; Zinc finger (C3HC4-type RING finger) family protein (425 aa)
     
   
  0.852
OAT
Uncharacterized protein; Ornithine aminotransferase ; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (425 aa)
           
  0.852
T6
Homeobox protein knotted-1-like LET6; May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5’-TGAC- 3’ (354 aa)
       
      0.831
101259725
Serine hydroxymethyltransferase; Interconversion of serine and glycine; Belongs to the SHMT family (471 aa)
       
      0.751
101256090
Serine hydroxymethyltransferase; Interconversion of serine and glycine; Belongs to the SHMT family (471 aa)
       
      0.751
101264168
R2R3 MYB transcription factor; Myb domain protein 60 (270 aa)
     
   
  0.711
101266875
Farnesylated protein 6 (153 aa)
       
 
  0.680
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (15%) [HD]