Solyc04g077120.2.1 protein (Solanum lycopersicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Solyc04g077120.2.1

Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 (333 aa)

Predicted Functional Partners:

Solyc04g080670.2.1

0.935

Solyc08g015630.2.1

0.912

Solyc03g118000.1.1

0.907

Solyc04g079820.2.1

0.901

Solyc12g088200.1.1

0.900

Solyc12g042430.1.1

0.900

Solyc08g076690.1.1

0.900

Solyc08g005130.1.1

0.900

Solyc06g072740.1.1

0.900

Solyc06g050990.2.1

0.900

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Solyc03g118000.1.1	Solyc04g077120.2.1	Uncharacterized protein	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	0.907
Solyc03g118000.1.1	Solyc04g079820.2.1	Uncharacterized protein	Uncharacterized protein	0.900
Solyc03g118000.1.1	Solyc04g080670.2.1	Uncharacterized protein	Uncharacterized protein	0.935
Solyc03g118000.1.1	Solyc06g050990.2.1	Uncharacterized protein	Uncharacterized protein	0.900
Solyc03g118000.1.1	Solyc06g072740.1.1	Uncharacterized protein	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	0.907
Solyc03g118000.1.1	Solyc08g005130.1.1	Uncharacterized protein	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	0.929
Solyc03g118000.1.1	Solyc08g015630.2.1	Uncharacterized protein	Uncharacterized protein	0.929
Solyc03g118000.1.1	Solyc08g076690.1.1	Uncharacterized protein	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	0.929
Solyc03g118000.1.1	Solyc12g042430.1.1	Uncharacterized protein	Uncharacterized protein	0.900
Solyc03g118000.1.1	Solyc12g088200.1.1	Uncharacterized protein	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	0.907
Solyc04g077120.2.1	Solyc03g118000.1.1	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	Uncharacterized protein	0.907
Solyc04g077120.2.1	Solyc04g079820.2.1	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	Uncharacterized protein	0.901
Solyc04g077120.2.1	Solyc04g080670.2.1	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	Uncharacterized protein	0.935
Solyc04g077120.2.1	Solyc06g050990.2.1	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	Uncharacterized protein	0.900
Solyc04g077120.2.1	Solyc06g072740.1.1	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	0.900
Solyc04g077120.2.1	Solyc08g005130.1.1	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	0.900
Solyc04g077120.2.1	Solyc08g015630.2.1	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	Uncharacterized protein	0.912
Solyc04g077120.2.1	Solyc08g076690.1.1	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	0.900
Solyc04g077120.2.1	Solyc12g042430.1.1	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	Uncharacterized protein	0.900
Solyc04g077120.2.1	Solyc12g088200.1.1	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	Inositol-tetrakisphosphate 1-kinase ; Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3	0.900

page 1 of 6

Network

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

Experiments

Fusion

© STRING Consortium 2018

Credits

Access

Info

About