STRINGSTRING
KN1 protein (Solanum lycopersicum) - STRING interaction network
"KN1" - Homeotic protein knotted-1 in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KN1Homeotic protein knotted-1 ; Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5’-TGAC-3’ (355 aa)    
Predicted Functional Partners:
lanceolate
Lanceolate (400 aa)
           
  0.912
VAHOX1
Homeobox (323 aa)
       
 
  0.699
fasciated
FAS protein (177 aa)
           
  0.697
LER6
LER6 (1282 aa)
           
  0.694
NAM
Goblet; NO APICAL MERISTEM (352 aa)
           
  0.691
Solyc01g094800.2.1
Uncharacterized protein (2236 aa)
       
 
  0.685
Solyc09g011380.2.1
Uncharacterized protein (504 aa)
       
 
0.650
BL3
Hop-interacting protein THI035 (644 aa)
       
 
0.649
FALSIFLORA
FLORICAULA/LEAFY-like protein (429 aa)
           
  0.621
Solyc08g065420.2.1
Uncharacterized protein (559 aa)
       
 
0.599
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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