STRINGSTRING
Solyc04g078120.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g078120.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g078120.2.1Uncharacterized protein (327 aa)    
Predicted Functional Partners:
Solyc04g016380.2.1
Uncharacterized protein (312 aa)
     
        0.830
Solyc07g047670.2.1
Pescadillo homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (603 aa)
     
        0.729
Solyc11g069440.1.1
Uncharacterized protein (166 aa)
     
 
  0.728
Solyc11g065670.1.1
Annotation not available (166 aa)
     
 
  0.728
Solyc06g075180.1.1
Uncharacterized protein (166 aa)
     
 
  0.728
Solyc04g050430.1.1
Uncharacterized protein (91 aa)
     
 
  0.728
Solyc04g050420.1.1
Uncharacterized protein (128 aa)
     
 
  0.728
Solyc04g050410.1.1
Uncharacterized protein (47 aa)
     
 
  0.728
Solyc04g050400.1.1
Uncharacterized protein (119 aa)
     
 
  0.728
Solyc04g050390.1.1
Uncharacterized protein (144 aa)
     
 
  0.728
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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