STRINGSTRING
Solyc04g078240.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g078240.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g078240.1.1Uncharacterized protein (161 aa)    
Predicted Functional Partners:
Solyc11g072880.1.1
Uncharacterized protein (1061 aa)
     
 
  0.620
Solyc07g022790.2.1
Uncharacterized protein (396 aa)
     
 
  0.620
Solyc07g022780.2.1
Uncharacterized protein (366 aa)
     
 
  0.620
Solyc07g022770.1.1
Uncharacterized protein (210 aa)
     
 
  0.620
LCA1
Calcium-transporting ATPase, endoplasmic reticulum-type ; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to an endomembrane compartment (1048 aa)
     
 
  0.620
Solyc03g120610.2.1
Uncharacterized protein (158 aa)
       
      0.568
Solyc02g087240.2.1
Uncharacterized protein (487 aa)
       
      0.568
Solyc04g078230.1.1
Uncharacterized protein (163 aa)
   
          0.522
Solyc12g094470.1.1
Uncharacterized protein (543 aa)
       
 
  0.488
Solyc12g094460.1.1
Uncharacterized protein (544 aa)
       
 
  0.488
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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