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STRINGSTRING
Solyc04g078240.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g078240.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g078240.1.1annotation not available (161 aa)    
Predicted Functional Partners:
cdc5
CDC5-like protein (987 aa)
       
      0.745
101247715
annotation not available (301 aa)
       
      0.719
Solyc09g050040.1.1
annotation not available (112 aa)
           
  0.551
101249253
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting (791 aa)
       
      0.531
101243768
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting (790 aa)
       
      0.531
101265987
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting (790 aa)
       
      0.531
Solyc04g008340.2.1
Uncharacterized protein; ZIP metal ion transporter family (489 aa)
         
  0.514
101252551
annotation not available (979 aa)
         
  0.497
101263066
annotation not available (988 aa)
         
  0.497
101249958
annotation not available (725 aa)
   
   
  0.490
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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