STRINGSTRING
Solyc04g079000.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g079000.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g079000.2.1Uncharacterized protein (293 aa)    
Predicted Functional Partners:
Solyc05g054720.2.1
Uncharacterized protein (271 aa)
           
  0.533
Solyc04g076740.2.1
Uncharacterized protein (271 aa)
           
  0.533
Solyc09g074940.1.1
Uncharacterized protein (1403 aa)
           
  0.531
Solyc09g031780.2.1
Uncharacterized protein (1005 aa)
           
  0.531
Solyc11g020300.1.1
Uncharacterized protein (443 aa)
           
  0.519
Solyc12g096550.1.1
Uncharacterized protein (546 aa)
           
  0.516
Solyc09g075830.2.1
Uncharacterized protein (1675 aa)
           
  0.514
Solyc10g051110.1.1
Uncharacterized protein (734 aa)
           
  0.510
Solyc05g052160.2.1
Translocase of chloroplast ; GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis (301 aa)
     
   
  0.490
Solyc11g062070.1.1
Uncharacterized protein (698 aa)
           
  0.489
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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