STRINGSTRING
Solyc04g079200.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g079200.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g079200.2.1Uncharacterized protein (312 aa)    
Predicted Functional Partners:
Solyc07g009140.2.1
Uncharacterized protein (386 aa)
     
  0.996
Solyc06g083620.2.1
Uncharacterized protein (444 aa)
     
  0.995
Solyc05g013030.1.1
Proteasome regulatory particle subunit (423 aa)
     
  0.990
Solyc02g081700.1.1
Proteasome subunit alpha type ; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH (248 aa)
     
  0.990
Solyc09g082320.2.1
Uncharacterized protein (204 aa)
     
  0.989
Solyc08g082700.2.1
Uncharacterized protein (267 aa)
     
  0.989
Solyc12g044740.1.1
Uncharacterized protein (483 aa)
     
  0.989
Solyc01g008370.2.1
Uncharacterized protein (310 aa)
     
  0.988
Solyc02g084920.2.1
Proteasome subunit beta type ; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (223 aa)
     
  0.988
Solyc07g016200.2.1
Proteasome subunit beta type ; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (236 aa)
     
  0.987
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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