• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc04g079380.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g079380.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g079380.1.1annotation not available (108 aa)    
Predicted Functional Partners:
Solyc11g021130.1.1
annotation not available (285 aa)
   
 
  0.995
Solyc04g049260.1.1
annotation not available (166 aa)
   
 
  0.994
rps16
30S ribosomal protein S16 (132 aa)
   
 
  0.993
Solyc07g008270.2.1
Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family (87 aa)
   
 
  0.989
3950466
30S ribosomal protein S8, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit (134 aa)
   
 
  0.985
Solyc04g079790.2.1
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (237 aa)
   
 
  0.983
101265769
annotation not available (218 aa)
   
 
  0.983
101261236
annotation not available (213 aa)
   
 
  0.983
Solyc12g062630.1.1
annotation not available (134 aa)
   
 
  0.983
3950459
30S ribosomal protein S18, chloroplastic ; Belongs to the bacterial ribosomal protein bS18 family (101 aa)
     
 
  0.982
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (10%) [HD]