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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc04g079470.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g079470.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g079470.2.1annotation not available (390 aa)    
Predicted Functional Partners:
Solyc06g034230.1.1
annotation not available (176 aa)
     
        0.834
Solyc04g080880.2.1
Uncharacterized protein; Xylem bark cysteine peptidase 3; Belongs to the peptidase C1 family (845 aa)
       
 
  0.744
Solyc03g120080.2.1
Periodic tryptophan protein 2 (666 aa)
     
        0.728
101244320
Protein arginine methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family (625 aa)
     
        0.723
tdi-65
Low-temperature-induced cysteine proteinase (466 aa)
       
 
  0.710
101246709
annotation not available (472 aa)
       
 
  0.710
101246497
annotation not available (500 aa)
       
 
  0.710
101247980
annotation not available (480 aa)
       
 
  0.710
101256135
annotation not available (470 aa)
       
 
  0.710
Solyc10g080180.1.1
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (499 aa)
     
        0.693
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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