Solyc04g079700.2.1 protein (Solanum lycopersicum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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gene co-occurrence

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co-expression

protein homology

Your Input:

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[Homology]

Score

Solyc04g079700.2.1

Uncharacterized protein (444 aa)

Predicted Functional Partners:

Solyc06g054080.2.1

0.964

Solyc03g121020.2.1

0.964

Solyc04g082980.1.1

0.944

Solyc03g115240.2.1

0.906

Solyc07g041550.2.1

0.876

Solyc07g041510.1.1

0.876

Solyc07g039550.2.1

0.799

Solyc01g110990.2.1

0.799

Solyc12g099770.1.1

0.726

Solyc11g065100.1.1

0.726

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Solyc01g110990.2.1	Solyc04g079700.2.1	Uncharacterized protein	Uncharacterized protein	0.799
Solyc01g110990.2.1	Solyc07g039550.2.1	Uncharacterized protein	Uncharacterized protein	0.910
Solyc03g115240.2.1	Solyc03g121020.2.1	Uncharacterized protein	Uncharacterized protein	0.994
Solyc03g115240.2.1	Solyc04g079700.2.1	Uncharacterized protein	Uncharacterized protein	0.906
Solyc03g115240.2.1	Solyc06g054080.2.1	Uncharacterized protein	Uncharacterized protein	0.988
Solyc03g115240.2.1	Solyc07g041510.1.1	Uncharacterized protein	Uncharacterized protein	0.989
Solyc03g115240.2.1	Solyc07g041550.2.1	Uncharacterized protein	Uncharacterized protein	0.988
Solyc03g121020.2.1	Solyc03g115240.2.1	Uncharacterized protein	Uncharacterized protein	0.994
Solyc03g121020.2.1	Solyc04g079700.2.1	Uncharacterized protein	Uncharacterized protein	0.964
Solyc03g121020.2.1	Solyc06g054080.2.1	Uncharacterized protein	Uncharacterized protein	0.995
Solyc03g121020.2.1	Solyc07g041510.1.1	Uncharacterized protein	Uncharacterized protein	0.990
Solyc03g121020.2.1	Solyc07g041550.2.1	Uncharacterized protein	Uncharacterized protein	0.989
Solyc04g079700.2.1	Solyc01g110990.2.1	Uncharacterized protein	Uncharacterized protein	0.799
Solyc04g079700.2.1	Solyc03g115240.2.1	Uncharacterized protein	Uncharacterized protein	0.906
Solyc04g079700.2.1	Solyc03g121020.2.1	Uncharacterized protein	Uncharacterized protein	0.964
Solyc04g079700.2.1	Solyc04g082980.1.1	Uncharacterized protein	Uncharacterized protein	0.944
Solyc04g079700.2.1	Solyc06g054080.2.1	Uncharacterized protein	Uncharacterized protein	0.964
Solyc04g079700.2.1	Solyc07g039550.2.1	Uncharacterized protein	Uncharacterized protein	0.799
Solyc04g079700.2.1	Solyc07g041510.1.1	Uncharacterized protein	Uncharacterized protein	0.876
Solyc04g079700.2.1	Solyc07g041550.2.1	Uncharacterized protein	Uncharacterized protein	0.876

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