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Solyc04g079850.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g079850.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g079850.1.1Uncharacterized protein; Pentatricopeptide repeat (PPR) superfamily protein (931 aa)    
Predicted Functional Partners:
101249766
Cation-transporting ATPase; Phosphate deficiency response 2 (1178 aa)
     
      0.665
CNOT1
Uncharacterized protein; Transcription regulators (2411 aa)
     
        0.646
101250941
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII) (1642 aa)
     
        0.643
101251902
Nucleotide binding;protein binding (452 aa)
     
        0.642
101245449
Uncharacterized protein; Endoribonucleases (729 aa)
       
 
  0.640
Xpo1
Exportin-1 (1075 aa)
     
      0.580
101250741
ARM repeat superfamily protein (1199 aa)
     
      0.580
101253335
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane, chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; Has 166 Blast hits to 166 proteins i /.../pecies- Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 4; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source- NCBI BLink) (635 aa)
     
 
  0.559
Solyc06g074770.2.1
annotation not available (925 aa)
     
        0.546
Solyc02g088550.2.1
annotation not available (512 aa)
     
        0.546
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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