STRINGSTRING
Solyc04g080340.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g080340.2.1" - Uncharacterized protein in Solanum lycopersicum
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g080340.2.1Uncharacterized protein (663 aa)    
Predicted Functional Partners:
Solyc05g055610.2.1
Uncharacterized protein (994 aa)
     
   
  0.683
Solyc04g005330.2.1
Uncharacterized protein (493 aa)
     
      0.676
Solyc12g005280.1.1
tRNA methyltransferase 5 homolog ; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (579 aa)
     
   
  0.555
Solyc05g006200.2.1
tRNA methyltransferase 5 homolog ; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (491 aa)
     
   
  0.555
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
     
   
  0.536
Solyc10g007320.2.1
Uroporphyrinogen decarboxylase (420 aa)
       
    0.517
Solyc06g048730.2.1
Uroporphyrinogen decarboxylase (388 aa)
       
    0.517
Solyc01g087390.2.1
Uncharacterized protein (341 aa)
   
   
  0.500
Solyc01g087380.2.1
Uncharacterized protein (255 aa)
   
   
  0.500
Solyc10g078880.1.1
DNA-directed RNA polymerase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1149 aa)
     
   
  0.486
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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