STRINGSTRING
Solyc04g080470.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc04g080470.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc04g080470.2.1Uncharacterized protein (326 aa)    
Predicted Functional Partners:
Solyc04g016530.2.1
DNA-(apurinic or apyrimidinic site) lyase (539 aa)
     
  0.812
Solyc03g111600.2.1
DNA-(apurinic or apyrimidinic site) lyase (377 aa)
     
  0.812
Solyc03g033530.2.1
Uncharacterized protein (591 aa)
     
  0.812
Solyc02g062720.2.1
Uncharacterized protein (353 aa)
   
   
 
0.804
Solyc11g073220.1.1
Uncharacterized protein (311 aa)
       
 
  0.653
Solyc11g072610.1.1
Uncharacterized protein (371 aa)
       
 
  0.653
Solyc10g079250.1.1
Putative recA protein (395 aa)
       
 
  0.653
Solyc07g066320.2.1
Uncharacterized protein (419 aa)
       
 
  0.653
RAD51
DNA repair protein RAD51 homolog ; Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Underwinds duplex DNA (By similarity) (342 aa)
       
 
  0.653
Solyc05g055780.2.1
Uncharacterized protein (418 aa)
       
 
  0.653
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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